nico's dna viewer

DNA alignment

Load a query sequence and a reference sequence, then run a local Smith-Waterman alignment.

Query

Sequence being aligned

No file loaded

Load XDNA or a sequence file such as FASTA, GenBank, SnapGene, SBOL, or JBEI to use as the query sequence.

Reference

Sequence to align against

No file loaded

Load XDNA or a sequence file such as FASTA, GenBank, SnapGene, SBOL, or JBEI to use as the reference sequence.

Accepted formats: .xdna, .txt, .fa, .fas, .fasta, .fna, .gb, .gbk, .genbank, .ape, .dna, .seq, .xml, .rdf, .jbei